Development of gene based markers
for crop improvement
Rajesh Singh1, Shiv
Kuamr Agrawal2
1Genetics
and Plant Breeding, IAS, BHU, Varanasi-221005 (UP), India
2Lentil Breeder and Food Legumes
Coordinator, ICARDA/Rabat Office, PO box 6299, Rabat-Institutes, Rabat 10112,
Morocco
Received: 13 February 2016 Revised
Accepted: 10 April 2016
ABSTRACT
The advancement in
biological research encompassing, generation of huge amount of
molecular-genetic data, development of impressive methodological skills in
molecular biology experimentation, and system and systems analyses, has set the
stage to search for ways/means to utilize the available resources to strengthen
interdisciplinary efforts to find solutions to the challenging goals in crop
improvement. With the
advent of molecular markers, a new generation of markers has been introduced
over the last two and half decades, which has revolutionized the entire
scenario of biological sciences. A positive fall out of such a realization and
efforts has been the identification/development of a new class of very useful
DNA markers called genic molecular markers (GMMs) utilizing the ever-increasing
archives of gene sequence information being accumulated under the EST
sequencing projects on a large number of plant species in the recent years.
These markers being part of the cDNA/EST- sequences, are expected to represent
the functional component of the genome i.e. gene(s) in contrast to all other
random DNA-based markers (RDMs) that are developed/generated from the anonymous
genomic DNA sequences/demonstrate large effects on adaptive plant behavior
remains fundamental to the development of GMMs. DNA-based
molecular markers have acted as versatile tools and have found their own
position in various fields. They are no longer looked upon as simple DNA
fingerprinting markers in variability studies or as mere forensic tools. Ever
since their development, they are constantly being modified to enhance their
utility and to bring about automation in the process of genome analysis. The
discovery of PCR (polymerase chain reaction) was a landmark in this effort and
proved to be a unique process that brought about a new class of DNA profiling
markers. This facilitated the development of marker-based gene tags, map-based
cloning of ergonomically important genes, variability studies, phylogenic analysis,
synteny mapping, marker-assisted selection of desirable genotypes, etc. In this article, genic/ functional developed during the last two decades of
molecular biology research and utilized for various applications in the area of
plant genome analysis are reviewed.
Key Words: Gene based markers, Molecular markers, Plant
breeding, Simple equnce repeat